Marabini Ruiz, Roberto roberto.marabini@uam.es
Actividades
- Artículos 91
- Libros 0
- Capítulos de libro 9
- Congresos 15
- Documentos de trabajo 0
- Informes técnicos 0
- Proyectos de investigación 4
- Tesis dirigidas 3
- Patentes o licencias de software 0
A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis
- Fernández-Giménez E
- Martínez MM
- Marabini R
- Strelak D
- Sánchez-García R
- Carazo JM
- Sorzano COS
Journal Of Structural Biology - 1/12/2023
10.1016/j.jsb.2023.108024 Ver en origen
- ISSN 10478477
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
- Jiménez de la Morena J
- Conesa P
- Fonseca YC
- de Isidro-Gómez FP
- Herreros D
- Fernández-Giménez E
- Strelak D
- Moebel E
- Buchholz TO
- Jug F
- Martinez-Sanchez A
- Harastani M
- Jonic S
- Conesa JJ
- Cuervo A
- Losana P
- Sánchez I
- Iceta M
- del Cano L
- Gragera M
- Melero R
- Sharov G
- Castaño-Díez D
- Koster A
- Piccirillo JG
- Vilas JL
- Otón J
- Marabini R
- Sorzano COS
- Carazo JM
Journal Of Structural Biology - 1/9/2022
10.1016/j.jsb.2022.107872 Ver en origen
- ISSN 10478477
Image processing tools for the validation of CryoEM maps
- Sorzano, C. O. S.
- Vilas, J. L.
- Ramirez-Aportela, E.
- Krieger, J.
- del Hoyo, D.
- Herreros, D.
- Fernandez-Gimenez, E.
- Marchan, D.
- Macias, J. R.
- Sanchez, I
- del Cano, L.
- Fonseca-Reyna, Y.
- Conesa, P.
- Garcia-Mena, A.
- Burguet, J.
- Garcia Condado, J.
- Mendez Garcia, J.
- Martinez, M.
- Munoz-Barrutia, A.
- Marabini, R.
- Vargas, J.
- Carazo, J. M.;
Faraday Discussions (p. 210-227) - 4/4/2022
10.1039/d2fd00059h Ver en origen
- ISSN 03017249
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
- Sorzano COS, Jiménez-Moreno A, Maluenda D, Martínez M, Ramírez-Aportela E, Krieger J, Melero R, Cuervo A, Conesa J, Filipovic J, Conesa P, Del Caño L, Fonseca YC, Jiménez-de la Morena J, Losana P, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Vilas JL, Marabini R, Carazo JM
Acta Crystallographica Section D-Structural Biology (p. 410-423) - 1/4/2022
- ISSN 20597983
- iMarina
Image processing tools for the validation of CryoEM maps (vol 240, pg 210, 2022)
- Sorzano, C. O. S.
- Vilas, J. L.
- Ramirez-Aportela, E.
- Krieger, J.
- del Hoyo, D.
- Herreros, D.
- Fernandez-Gimenez, E.
- Marchan, D.
- Gomez, F. de Isidro
- Macias, J. R.
- Sanchez, I
- del Cano, L.
- Fonseca-Reyna, Y.
- Conesa, P.
- Garcia-Mena, A.
- Burguet, J.
- Condado, J. Garcia
- Garcia, J. Mendez
- Martinez, M.
- Munoz-Barrutia, A.
- Marabini, R.
- Vargas, J.
- Carazo, J. M.;
Faraday Discussions (p. 228-228) - 11/11/2022
10.1039/d2fd90074b Ver en origen
- ISSN 03017249
Cryo-EM and Single-Particle Analysis with Scipion
- Jiménez-Moreno A
- Del Caño L
- Martínez M
- Ramírez-Aportela E
- Cuervo A
- Melero R
- Sánchez-García R
- Strelak D
- Fernández-Giménez E
- de Isidro-Gómez FP
- Herreros D
- Conesa P
- Fonseca Y
- Maluenda D
- Jiménez de la Morena J
- Macías JR
- Losana P
- Marabini R
- Carazo JM
- Sorzano COS
Jove-Journal Of Visualized Experiments - 1/5/2021
- ISSN 1940087X
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
- Sorzano COS
- Semchonok D
- Lin SC
- Lo YC
- Vilas JL
- Jiménez-Moreno A
- Gragera M
- Vacca S
- Maluenda D
- Martínez M
- Ramírez-Aportela E
- Melero R
- Cuervo A
- Conesa JJ
- Conesa P
- Losana P
- Caño Ld
- de la Morena JJ
- Fonseca YC
- Sánchez-García R
- Strelak D
- Fernández-Giménez E
- de Isidro F
- Herreros D
- Kastritis PL
- Marabini R
- Bruce BD
- Carazo JM
Journal Of Structural Biology - 1/3/2021
10.1016/j.jsb.2020.107695 Ver en origen
- ISSN 10478477
Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins
- Marabini, Roberto
- Condezo, Gabriela N.
- Krupovic, Mart
- Menendez-Conejero, Rosa
- Gomez-Blanco, Josue
- San Martin, Carmen;
Science Advances - 1/3/2021
10.1126/sciadv.abe6008 Ver en origen
- ISSN 23752548
Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses
- Perez-Illana, Marta
- Martinez, Marta
- Condezo, Gabriela N
- Hernando-Perez, Mercedes
- Mangroo, Casandra
- Brown, Martha
- Marabini, Roberto
- San Martin, Carmen
Science Advances - 24/2/2021
10.1126/sciadv.abd9421 Ver en origen
- ISSN 23752548
FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation
- Ramírez-Aportela E
- Maluenda D
- Fonseca YC
- Conesa P
- Marabini R
- Heymann JB
- Carazo JM
- Sorzano COS
Nature Communications - 1/12/2021
10.1038/s41467-020-20295-w Ver en origen
- ISSN 20411723
Este/a investigador/a no tiene libros.
Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods
- Sorzano COS
- Jiménez-Moreno A
- Maluenda D
- Ramírez-Aportela E
- Martínez M
- Cuervo A
- Melero R
- Conesa JJ
- Sánchez-García R
- Strelak D
- Filipovic J
- Fernández-Giménez E
- de Isidro-Gómez F
- Herreros D
- Conesa P
- del Caño L
- Fonseca Y
- de la Morena JJ
- Macías JR
- Losana P
- Marabini R
- Carazo JM
Methods In Molecular Biology (p. 257-289) - 1/1/2021
10.1007/978-1-0716-1406-8_13 Ver en origen
- ISSN 10643745
Soft X-ray tomography imaging for biological samples
- Otón J
- Sorzano COS
- Chichón FJ
- Carrascosa JL
- Carazo JM
- Marabini R
Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014
10.1007/978-1-4614-9521-5_8 Ver en origen
- ISSN 22965009
Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards
- Sorzano COS
- Marabini R
- Vargas J
- Otón J
- Cuenca-Alba J
- Quintana A
- de la Rosa-Trevín JM
- Carazo JM
Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014
10.1007/978-1-4614-9521-5_2 Ver en origen
- ISSN 22965009
Consistent and elastic registration of histological sections using vector-spline regularization
- Arganda-Carreras I
- Sorzano COS
- Marabini R
- Carazo JM
- Ortiz-De-Solorzano C
- Kybic J
Lecture Notes In Computer Science (p. 85-95) - 1/1/2006
10.1007/11889762_8 Ver en origen
- ISBN 9783540462576
- ISSN 03029743
- iMarina
- iMarina
Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy
- Carazo J
- Herman G
- Sorzano C
- Marabini R
Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006
Grid computing in structure determination of biological specimens by electron microscope tomography
- Fernández JJ
- Bilbao-Castro JR
- Marabini R
- Carazo JM
- García I
Lecture Notes In Computer Science (p. 171-181) - 1/1/2004
10.1007/978-3-540-24689-3_22 Ver en origen
- ISBN 9783540210481
- ISSN 03029743
- iMarina
- iMarina
Discrete Tomography in Electron Microscopy
- Carazo, JM
- Sorzano COS
- Rietzel, E
- Schroder, R
- Marabini Ruiz, Roberto
Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999
A GA-optimized neural network for classification of biological particles from electron-microscopy images
- Marabini Ruiz, Roberto
Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997
Pattern recognition and classification of images of biological macromolecules using neural networks
- MARABINI, R
- CARAZO, JM;
Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994
- iMarina
FSC-Q: A method for quality analysis of cryoEM-derived models
- Ramirez-Aportela, E
- Maluenda, D
- Fonseca, YC
- Conesa, P
- Marabini, R
- Sorzano, COS
- Carazo, JM
Acta Crystallographica A-Foundation And Advances (p. C56-C56) - 1/8/2021
- ISSN 20532733
- iMarina
Iterative reconstruction for pet scanners with continuous scintillators
- Iriarte A
- Caffarena G
- Lopez-Fernandez M
- Garcia-Carmona R
- Otero A
- Sorzano C
- Marabini R
Conference Proceedings : ... Annual International Conference Of The Ieee Engineering In Medicine And Biology Society. Ieee Engineering In Medicine And Biology Society. Conference (p. 2259-2262) - 4/11/2015
10.1109/embc.2015.7318842 Ver en origen
- ISBN 978-142449271-8
- ISSN 1557170X
An image processing approach to the simulation of electron microscopy volumes of atomic structures
- Sorzano C
- Vargas J
- Oton J
- Abrishami V
- De La Rosa-Trevin J
- Del Riego S
- Fernandez-Alderete A
- Martinez-Rey C
- Marabini R
- Carazo J
2014 Ieee International Conference On Image Processing, Icip 2014 (p. 2095-2099) - 28/1/2014
Outlier detection for single particle analysis in Electron Microscopy
- Sorzano, C. O. S.
- Vargas, J.
- de la Rosa-Trevin, J. M.
- Zaldivar-Peraza, A.
- Oton, J.
- Abrishami, V.
- Foche, I.
- Marabini, R.
- Caffarena, G.
- Carazo, J. M.;
Proceedings Iwbbio 2014: International Work-Conference On Bioinformatics And Biomedical Engineering (p. 950-959) - 1/1/2014
- ISBN 9788415814849
- iMarina
Image processing for Cellular tomography using soft X-rays
- Sorzano
- C O S Oton
- J Cuenca
- J Zaldivar-Perez
- A Caffarena
- G Sanchez-Jimenez
- J Messaoudi
- C Marco
- S Marabini
- R Carazo
- J M
2012 9th Ieee International Symposium On Biomedical Imaging (Isbi) (p. 1322-1322) - 1/4/2012
- ISBN 9781457718571
- ISSN 9781457718588
- iMarina
Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles
- Sorzano C
- Iriarte A
- Marabini R
- Carazo J
Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009
10.1109/wisp.2009.5286563 Ver en origen
- ISBN 978-1-4244-5059-6
Volumetric constraints in 3D tomography applied to electron microscopy
- Marabini R
- Herman G
- Sorzano C
- Carazo J
Proceedings (International Symposium On Biomedical Imaging) (p. 641-644) - 1/1/2002
10.1109/isbi.2002.1029339 Ver en origen
- ISBN 0-7803-7584-X
- ISSN 19457928
3D reconstruction of 2D crystals from projections in real space
- Marabini R
- Herman G
- Sorzano C
- Carazo J
- Fernandez J
- Matej S
Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002
10.1109/isbi.2002.1029351 Ver en origen
- ISSN 19457928
The effect of overabundant projection directions on 3D reconstruction algorithms
Journal Of Structural Biology (p. 108-118) - 1/1/2001
10.1006/jsbi.2001.4338 Ver en origen
- ISSN 10478477
Este/a investigador/a no tiene documentos de trabajo.
Este/a investigador/a no tiene informes técnicos.
Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.
- Marabini Ruiz, Roberto (Investigador principal (IP))
Ejecución: 01-01-2010 - 31-12-2012
- iMarina
Computación de altas prestaciones en tomografía
- Marabini Ruiz, Roberto (Investigador principal (IP))
Ejecución: 01-01-2010 - 01-01-2013
- iMarina
Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.
- Ignacio Arganda Carreras (Investigador/a)
- Ana Iriarte Ruiz (Investigador/a)
- Simone Santini (Investigador/a)
- Marabini Ruiz, Roberto (Investigador principal (IP))
Ejecución: 10-01-2007 - 04-04-2010
- iMarina
Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.
- Iriarte Ruiz, Ana (Investigador/a)
- SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
- Javier Velazquez Muriel (Investigador/a)
- Monica Chagoyen Quiles (Investigador/a)
- Carazo Garcia, Jose Maria S (Investigador/a)
- Carlos Oscar Sanchez Sorzano (Investigador/a)
- Marabini Ruiz, Roberto (Investigador principal (IP))
Ejecución: 01-01-2005 - 31-05-2008
- iMarina
Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy
- Marabini Ruiz, Roberto (Autor o Coautor)
- Roberto Marabini Ruiz (Director)
- José María Carazo García (Director) Doctorando: Miguel de la Rosa
25/10/2017
- iMarina
New computational methods toward atomic resolution in single particle cryo-electron microscopy
- Marabini Ruiz, Roberto (Autor o Coautor)
- José María Carazo García (Director)
- Carlos Oscar Sanchez Sorzano (Director)
- Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami
22/6/2016
- iMarina
Este/a investigador/a no tiene patentes o licencias de software.
Perfiles de investigador/a
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