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Author profile at the institutional portal

Marabini Ruiz, Roberto roberto.marabini@uam.es

Ingeniería informática / Universidad Autónoma de Madrid

Publications

Aviadenovirus structure: A highly thermostable capsid in the absence of stabilizing proteins.

  • Pérez-Illana M
  • Schachner A
  • Hernando-Pérez M
  • Condezo GN
  • Paradela A
  • Martínez M
  • Marabini R
  • Hess M
  • San Martín C
... View more Collapse

Plos Pathogens (p. e1013553-e1013553) - 9/10/2025

  • ISSN 15537366
  • iMarina

A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis

  • Fernández-Giménez, E
  • Martínez, MM
  • Marabini, R
  • Strelak, D
  • Sánchez-García, R
  • Carazo, JM
  • Sorzano, COS
... View more Collapse

Journal Of Structural Biology - 1/12/2023

10.1016/j.jsb.2023.108024 View at source

  • ISSN 10478477

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

  • Jiménez de la Morena J
  • Conesa P
  • Fonseca YC
  • de Isidro-Gómez FP
  • Herreros D
  • Fernández-Giménez E
  • Strelak D
  • Moebel E
  • Buchholz TO
  • Jug F
  • Martinez-Sanchez A
  • Harastani M
  • Jonic S
  • Conesa JJ
  • Cuervo A
  • Losana P
  • Sánchez I
  • Iceta M
  • del Cano L
  • Gragera M
  • Melero R
  • Sharov G
  • Castaño-Díez D
  • Koster A
  • Piccirillo JG
  • Vilas JL
  • Otón J
  • Marabini R
  • Sorzano COS
  • Carazo JM
... View more Collapse

Journal Of Structural Biology (p. 107872-107872) - 1/9/2022

10.1016/j.jsb.2022.107872 View at source

  • ISSN 10478477
Open Access

Image processing tools for the validation of CryoEM maps

  • Sorzano, COS
  • Vilas, JL
  • Ramírez-Aportela, E
  • Krieger, J
  • del Hoyo, D
  • Herreros, D
  • Fernandez-Giménez, E
  • Marchán, D
  • Macías, JR
  • Sánchez,
  • del Caño, L
  • Fonseca-Reyna, Y
  • Conesa, P
  • García-Mena, A
  • Burguet, J
  • Condado, JG
  • Garcia, JM
  • Martínez, M
  • Muñoz-Barrutia, A
  • Marabini, R
  • Vargas, J
  • Carazo, JM
... View more Collapse

Faraday Discussions (p. 210-227) - 4/4/2022

10.1039/d2fd00059h View at source

  • ISSN 03017249

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

  • Sorzano, COS
  • Jiménez-Moreno, A
  • Maluenda, D
  • Martínez, M
  • Ramírez-Aportela, E
  • Krieger, J
  • Melero, R
  • Cuervo, A
  • Conesa, J
  • Filipovic, J
  • Conesa, P
  • del Caño, L
  • Fonseca, YC
  • Jiménez-de la Morena, J
  • Losana, P
  • Sánchez-García, R
  • Strelak, D
  • Fernández-Giménez, E
  • de Isidro-Gómez, FP
  • Herreros, D
  • Vilas, JL
  • Marabini, R
  • Carazo, JM
... View more Collapse

Acta Crystallographica Section D-Structural Biology (p. 410-423) - 1/4/2022

10.1107/s2059798322001978 View at source

  • ISSN 20597983

Image processing tools for the validation of CryoEM maps (vol 240, pg 210, 2022)

  • Sorzano, COS
  • Vilas, JL
  • Ramírez-Aportela, E
  • Krieger, J
  • del Hoyo, D
  • Herreros, D
  • Fernandez-Giménez, E
  • Marchán, D
  • Gómez, F
  • Macías, JR
  • Sánchez,
  • del Caño, L
  • Fonseca-Reyna, Y
  • Conesa, P
  • García-Mena, A
  • Burguet, J
  • Condado, JG
  • García, JM
  • Martínez, M
  • Muñoz-Barrutia, A
  • Marabini, R
  • Vargas, J
  • Carazo, JM
... View more Collapse

Faraday Discussions (p. 228-228) - 11/11/2022

10.1039/d2fd90074b View at source

  • ISSN 03017249

Cryo-EM and Single-Particle Analysis with Scipion

  • Jiménez-Moreno A
  • Del Caño L
  • Martínez M
  • Ramírez-Aportela E
  • Cuervo A
  • Melero R
  • Sánchez-García R
  • Strelak D
  • Fernández-Giménez E
  • de Isidro-Gómez FP
  • Herreros D
  • Conesa P
  • Fonseca Y
  • Maluenda D
  • Jiménez de la Morena J
  • Macías JR
  • Losana P
  • Marabini R
  • Carazo JM
  • Sorzano COS
... View more Collapse

Jove-Journal Of Visualized Experiments - 1/5/2021

10.3791/62261 View at source

  • ISSN 1940087X

Algorithmic robustness to preferred orientations in single particle analysis by CryoEM

  • Sorzano, COS
  • Semchonok, D
  • Lin, SC
  • Lo, YC
  • Vilas, JL
  • Jiménez-Moreno, A
  • Gragera, M
  • Vacca, S
  • Maluenda, D
  • Martínez, M
  • Ramírez-Aportela, E
  • Melero, R
  • Cuervo, A
  • Conesa, JJ
  • Conesa, P
  • Losana, P
  • Del Caño, L
  • de la Morena, JJ
  • Fonseca, YC
  • Sánchez-García, R
  • Strelak, D
  • Fernández-Giménez, E
  • de Isidro, F
  • Herreros, D
  • Kastritis, PL
  • Marabini, R
  • Bruce, BD
  • Carazo, JM
... View more Collapse

Journal Of Structural Biology - 1/3/2021

10.1016/j.jsb.2020.107695 View at source

  • ISSN 10478477

Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins

  • Marabini, R
  • Condezo, GN
  • Krupovic, M
  • Menéndez-Conejero, R
  • Gómez-Blanco, J
  • San Martín, C

Science Advances - 1/3/2021

10.1126/sciadv.abe6008 View at source

  • ISSN 23752548

Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses

  • Pérez-Illana, M
  • Martínez, M
  • Condezo, GN
  • Hernando-Pérez, M
  • Mangroo, C
  • Brown, M
  • Marabini, R
  • San Martín, C
... View more Collapse

Science Advances - 24/2/2021

10.1126/sciadv.abd9421 View at source

  • ISSN 23752548

This researcher has no books.

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano, COS
  • Jiménez-Moreno, A
  • Maluenda, D
  • Ramírez-Aportela, E
  • Martínez, M
  • Cuervo, A
  • Melero, R
  • Conesa, JJ
  • Sánchez-García, R
  • Strelak, D
  • Filipovic, J
  • Fernández-Giménez, E
  • de Isidro-Gómez, F
  • Herreros, D
  • Conesa, P
  • del Caño, L
  • Fonseca, Y
  • de la Morena, JJ
  • Macías, JR
  • Losana, P
  • Marabini, R
  • Carazo, JM
... View more Collapse

Methods In Molecular Biology (p. 257-289) - 1/1/2021

10.1007/978-1-0716-1406-8_13 View at source

  • ISSN 10643745

Soft X-ray tomography imaging for biological samples

  • Otón, J
  • Sorzano, COS
  • Chichón, FJ
  • Carrascosa, JL
  • Carazo, JM
  • Marabini, R

Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014

10.1007/978-1-4614-9521-5_8 View at source

  • ISSN 22965009

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano, COS
  • Marabini, R
  • Vargas, J
  • Otón, J
  • Cuenca-Alba, J
  • Quintana, A
  • de la Rosa-Trevín, JM
  • Carazo, JM
... View more Collapse

Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014

10.1007/978-1-4614-9521-5_2 View at source

  • ISSN 22965009

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras I
  • Sorzano COS
  • Marabini R
  • Carazo JM
  • Ortiz-De-Solorzano C
  • Kybic J

Lecture Notes In Computer Science (p. 85-95) - 1/1/2006

10.1007/11889762_8 View at source

  • ISBN 9783540462576
  • ISSN 03029743

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J
  • Herman G
  • Sorzano C
  • Marabini R

Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006

10.1007/978-0-387-69008-7_8 View at source

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández JJ
  • Bilbao-Castro JR
  • Marabini R
  • Carazo JM
  • García I

Lecture Notes In Computer Science (p. 171-181) - 1/1/2004

10.1007/978-3-540-24689-3_22 View at source

  • ISBN 9783540210481
  • ISSN 03029743

Discrete Tomography in Electron Microscopy

  • J.M. Carazo
  • Carlos Óscar S. Sorzano
  • E. Rietzel
  • Rasmus R. Schröder
  • R. Marabini

Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999

10.1007/978-1-4612-1568-4_18 View at source

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Marabini Ruiz, Roberto

Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997

10.1007/bfb0032577 View at source

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM;

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994

  • iMarina

FSC-Q: A method for quality analysis of cryoEM-derived models

  • Ramirez-Aportela, E
  • Maluenda, D
  • Fonseca, YC
  • Conesa, P
  • Marabini, R
  • Sorzano, COS
  • Carazo, JM
... View more Collapse

Acta Crystallographica A-Foundation And Advances (p. C56-C56) - 1/8/2021

  • ISSN 20532733
  • iMarina

Fowl aviadenoviruses on the move: the structure of a highly stable complex capsid

  • Pérez-Illana, M
  • Schachner, A
  • Condezo, GN
  • Hernando-Pérez, M
  • Menéndez, M
  • Marabini, R
  • San Martín, C
  • Hess, M
... View more Collapse

European Biophysics Journal With Biophysics Letters (p. S148-S148) - 1/7/2019

  • ISSN 01757571
  • iMarina

Iterative reconstruction for pet scanners with continuous scintillators

  • Iriarte, A
  • Caffarena, G
  • López-Fernández, M
  • García-Carmona, R
  • Otero, A
  • Sorzano, COS
  • Marabini, R
... View more Collapse

Conference Proceedings : ... Annual International Conference Of The Ieee Engineering In Medicine And Biology Society. Ieee Engineering In Medicine And Biology Society. Conference (p. 2259-2262) - 4/11/2015

10.1109/embc.2015.7318842 View at source

  • ISBN 978-142449271-8
  • ISSN 1557170X

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano C
  • Vargas J
  • Oton J
  • Abrishami V
  • De La Rosa-Trevin J
  • Del Riego S
  • Fernandez-Alderete A
  • Martinez-Rey C
  • Marabini R
  • Carazo J
... View more Collapse

2014 Ieee International Conference On Image Processing, Icip 2014 (p. 2095-2099) - 28/1/2014

10.1109/icip.2014.7025420 View at source

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.;
... View more Collapse

Proceedings Iwbbio 2014: International Work-Conference On Bioinformatics And Biomedical Engineering (p. 950-959) - 1/1/2014

  • ISBN 9788415814849
  • iMarina

Image processing for Cellular tomography using soft X-rays

  • Sorzano, COS
  • Otón, J
  • Cuenca, J
  • Zaldivar-Pérez, A
  • Caffarena, G
  • Sánchez-Jiménez, J
  • Messaoudi, C
  • Marco, S
  • Marabini, R
  • Carazo, JM
... View more Collapse

2012 9th Ieee International Symposium On Biomedical Imaging (Isbi) (p. 1322-1322) - 1/4/2012

10.1109/isbi.2012.6235808 View at source

  • ISBN 9781457718571
  • ISSN 9781457718588

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano COS
  • Iriarte A
  • Marabini R
  • Carazo JM

Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009

10.1109/wisp.2009.5286563 View at source

  • ISBN 978-1-4244-5059-6

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R
  • Herman GT
  • Sorzano COS
  • Carazo JM

Proceedings (International Symposium On Biomedical Imaging) (p. 641-644) - 1/1/2002

10.1109/isbi.2002.1029339 View at source

  • ISBN 0-7803-7584-X
  • ISSN 19457928

3D reconstruction of 2D crystals from projections in real space

  • Marabini R
  • Herman GT
  • Sorzano COS
  • Carazo JM
  • Fernandez JJ
  • Matej S

Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002

10.1109/isbi.2002.1029351 View at source

  • ISSN 19457928

The effect of overabundant projection directions on 3D reconstruction algorithms

  • Sorzano C
  • Marabini R
  • Boisset N
  • Rietzel E
  • Schröder R
  • Herman G
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 108-118) - 1/1/2001

10.1006/jsbi.2001.4338 View at source

  • ISSN 10478477

This researcher has no working papers.

This researcher has no technical reports.

Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 31-12-2012

  • iMarina

Computación de altas prestaciones en tomografía

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 01-01-2013

  • iMarina

Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.

  • Ignacio Arganda Carreras (Investigador/a)
  • Ana Iriarte Ruiz (Investigador/a)
  • Simone Santini (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 10-01-2007 - 04-04-2010

  • iMarina

Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.

  • Iriarte Ruiz, Ana (Investigador/a)
  • SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
  • Javier Velazquez Muriel (Investigador/a)
  • Monica Chagoyen Quiles (Investigador/a)
  • Carazo Garcia, Jose Maria S (Investigador/a)
  • Carlos Oscar Sanchez Sorzano (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))
... View more Collapse

Period: 01-01-2005 - 31-05-2008

  • iMarina

Study of the molecular mechanisms that determine changes in the nutritional profile of Chenopodium quinoa Willd. under different environmental conditions

  • Marabini Ruiz, Roberto (Tutor)
  • Reguera Blazquez, Maria (Director) Doctorando: GRANADO RODRIGUEZ, SARA

14/3/2024

  • iMarina

Desarrollo de algoritmos de procesamiento de imagen para Crio-microscopía Electrónica

  • Carazo, Jose Maria (Director)
  • Sánchez Sorzano, Carlos Óscar (Director)
  • Marabini Ruiz, Roberto (Tutor) Doctorando: Fernández Giménez, Maria Estrella

6/2/2024

  • iMarina

Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy

  • Carazo Garcia, Jose Maria S (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Jose Miguel de la Rosa Trevin

25/10/2017

  • iMarina

New computational methods toward atomic resolution in single particle cryo-electron microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • José María Carazo García (Director)
  • Carlos Oscar Sanchez Sorzano (Director)
  • Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami

22/6/2016

  • iMarina

High resolution three-dimensional reconstruction for small animal pet cameras

  • SORZANO SANCHEZ, CARLOS OSCAR (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Iriarte Ruiz, Ana

19/7/2012

  • iMarina

This researcher has no patents or software licenses.

Last data update: 2/16/26 3:45 AM