Huerta Cepas, Jaime j.huerta@upm.es
Publications
- Articles 75
- Books 0
- Book chapters 0
- Conferences 1
- Working papers 0
- Technical reports 0
- Research projects 6
- Supervised theses 3
- Patent or software license 0
Reference-Based Gene Expression Analysis Using Galaxy Server.
- González-Bodí S
- Huerta-Cepas J
Methods In Molecular Biology (p. 309-338) - 1/1/2025
- ISSN 10643745
- iMarina
Discovery of antimicrobial peptides in the global microbiome with machine learning
- Santos, CD Jr
- Torres, MDT
- Duan, YQ
- del Río, AR
- Schmidt, TSB
- Chong, H
- Fullam, A
- Kuhn, M
- Zhu, CK
- Houseman, A
- Somborski, J
- Vines, A
- Zhao, XM
- Bork, P
- Huerta-Cepas, J
- de la Fuente-Nunez, C
- Coelho, LP
Cell (p. 3761-3778.e16) - 11/7/2024
- ISSN 00928674
- iMarina
Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments
- Baker, BA
- Gutiérrez-Preciado, A
- del Río, AR
- Mccarthy, CGP
- López-García, P
- Huerta-Cepas, J
- Susko, E
- Roger, AJ
- Eme, L
- Moreira, D
Nature Microbiology (p. 964-975) - 22/3/2024
10.1038/s41564-024-01647-4 View at source
- ISSN 20585276
A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer
- Dmitrijeva, M
- Tackmann, J
- Rodrigues, JFM
- Huerta-Cepas, J
- Coelho, LP
- von Mering, C
Nature Ecology & Evolution (p. 986-998) - 5/3/2024
10.1038/s41559-024-02357-0 View at source
- ISSN 2397334X
Functional and evolutionary significance of unknown genes from uncultivated taxa
- del Rio, AR
- Giner-Lamia, J
- Cantalapiedra, CP
- Botas, J
- Deng, ZQ
- Hernandez-Plaza, A
- Munar-Palmer, M
- Santamaria-Hernando, S
- Rodriguez-Herva, JJ
- Ruscheweyh, HJ
- Paoli, L
- Schmidt, TSB
- Sunagawa, S
- Bork, P
- Lopez-Solanilla, E
- Coelho, LP
- Huerta-Cepas, J
Nature (p. 377-384) - 8/2/2024
10.1038/s41586-023-06955-z View at source
- ISSN 00280836
Quest for Orthologs in the Era of Biodiversity Genomics
- Langschied, F
- Bordin, N
- Cosentino, S
- Fuentes-Palacios, D
- Glover, N
- Hiller, M
- Hu, YH
- Huerta-Cepas, J
- Coelho, LP
- Iwasaki, W
- Majidian, S
- Manzano-Morales, S
- Persson, E
- Richards, TA
- Gabaldon, T
- Sonnhammer, E
- Thomas, PD
- Dessimoz, C
- Ebersberger, I
Genome Biology And Evolution - 30/10/2024
- ISSN 17596653
- iMarina
Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers
- Díaz-García, C
- Moreno, E
- Talavera-Rodríguez, A
- Martín-Fernández, L
- González-Bodi, S
- Martín-Pedraza, L
- Pérez-Molina, JA
- Dronda, F
- Gosalbes, MJ
- Luna, L
- Vivancos, MJ
- Huerta-Cepas, J
- Moreno, S
- Serrano-Villar, S
Microbiome - 22/10/2024
- ISSN 20492618
- iMarina
Exploring the sediment-associated microbiota of the Mar Menor coastal lagoon
- Giner-Lamia, J
- Huerta-Cepas, J
Frontiers In Marine Science - 23/1/2024
10.3389/fmars.2024.1319961 View at source
- ISSN 22967745
Computational exploration of the global microbiome for antibiotic discovery.
- Santos-Júnior CD
- Der Torossian Torres M
- Duan Y
- Del Río ÁR
- Schmidt TSB
- Chong H
- Fullam A
- Kuhn M
- Zhu C
- Houseman A
- Somborski J
- Vines A
- Zhao XM
- Bork P
- Huerta-Cepas J
- de la Fuente-Nunez C
- Coelho LP
11/9/2023
- iMarina
Atlas of mRNA translation and decay for bacteria
- Huch, S
- Nersisyan, L
- Ropat, M
- Barrett, D
- Wu, MJ
- Wang, J
- Valeriano, VD
- Vardazaryan, N
- Huerta-Cepas, J
- Wei, W
- Du, J
- Steinmetz, LM
- Engstrand, L
- Pelechano, V
Nature Microbiology (p. 1123-1136) - 1/6/2023
10.1038/s41564-023-01393-z View at source
- ISSN 20585276
This researcher has no books.
This researcher has no book chapters.
This researcher has no working papers.
This researcher has no technical reports.
RESUME THE SEARCH OF THE FUNGUS SPECIES IN SAMPLES FROM USA, PROYECTO ABIERTO
- HUERTA CEPAS, JAIME (Colaborador/a)
- PEREZ CANTALAPIEDRA, CARLOS (Investigador principal (IP))
Period: 09-01-2024 - 08-07-2024
Type of funding: Internal
- iMarina
SEARCH IN FUNGAL DATABASES USING A PRE ASSEMBLED AND ANNOTATED REFERENCED GENOME
- HUERTA CEPAS, JAIME (Colaborador/a)
- PEREZ CANTALAPIEDRA, CARLOS (Investigador principal (IP))
Period: 08-06-2023 - 08-12-2023
Type of funding: Internal
- iMarina
Hub de Innovación Digital en Inteligencia Artificial y Robótica para los Objetivos de Desarrollo Sostenible
- Corcho García, Oscar (Participante)
- MATEOS CABALLERO, ALFONSO (Participante)
- MORENO DIAZ, ARMINDA (Participante)
- GARCIA ARES, BIENVENIDO (Participante)
- Amigo Rodríguez, Ana (Participante)
- MUÑOZ PORTA, DACIL ISABEL (Participante)
- FERRE PEREZ, MANUEL (Participante)
- MUÑOZ GUIJOSA, JUAN MANUEL (Participante)
- HUERTA CEPAS, JAIME (Participante)
- GONZALEZ BODI, SARA (Participante)
- BARRIENTOS CRUZ, ANTONIO (Participante)
- LARRAÑAGA MUGICA, PEDRO MARIA (Participante)
- CERRO GINER, JAIME DEL (Participante)
- BIELZA LOZOYA, MARIA CONCEPCION (Participante)
- MARTINEZ GAMERO, ROBERTO (Participante)
- GARCIA CUESTA, ESTEBAN (Participante)
- LUCAS DEL POZO, MIGUEL ANGEL (Participante)
- VALLE FERNáNDEZ, ROBERTO (Participante)
- GOMEZ PEREZ, ASUNCION DE MARIA (Investigador principal (IP))
- Molina González, Martín (Participante)
- MIHALJEVIC, BOJAN (Participante)
- FERRE GRAU, XAVIER (Participante)
- MOLINA FERNANDEZ, ANTONIO (Participante)
- Salgado Alvarez de Sotomayor, Luis (Participante)
- SENRA DIAZ, ARISTIDES (Participante)
- MARTINEZ SALLES, IVAN (Participante)
- AGUILERA BENITO, PATRICIA (Participante)
- CABEZAS TEJERO, ISMAEL (Participante)
- CUBEIRO ESPINOSA, BEATRIZ (Participante)
- BERMEJO NIETO, ANA BELEN (Participante)
- JIMENEZ MARTIN, ANTONIO (Participante)
- RODRIGUEZ DONCEL, VICTOR (Participante)
Period: 29-11-2021 - 30-06-2023
- iMarina
ETE Toolkit: Phylogenomic data analysis and visualization
- MOLINA FERNANDEZ, ANTONIO (Investigador principal (IP))
- HUERTA CEPAS, JAIME (Participante)
Period: 01-07-2020 - 31-12-2021
Type of funding: International
Amount of funding: 73700,00 Euros.
- iMarina
Investigación y desarrollo de soluciones tecnológicas basadas en el microbioma implicado en el procesado de los residuos sólidos urbanos (MICROUWAS-BIO)
- LÓPEZ GARCÍA, GEMMA (Participante)
- SOUSARAEI, NAEIMEH (Participante)
- MOLINA FERNANDEZ, ANTONIO (Investigador principal (IP))
- HUERTA CEPAS, JAIME (Participante)
Period: 01-10-2020 - 31-03-2023
Type of funding: National
- iMarina
Ecology and Evolution of Chemoreceptors: a global genomic and metagenomic survey
- HUERTA CEPAS, JAIME (Director)
- López Solanilla, Emilia A. (Director) Doctorando: Sanchis López, Claudia
7/3/2025
- iMarina
Novel Bioinformatics Tools for Analysis and Visualization of Phylogenomic Data at Scale
- HUERTA CEPAS, JAIME (Director) Doctorando: Deng, Ziqi
12/3/2024
- iMarina
This researcher has no patents or software licenses.
Researcher profiles
-
Scopus Author ID