Marabini Ruiz, Roberto roberto.marabini@uam.es

Actividades

ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds

  • Cuenca-Alba J
  • del Cano L
  • Gómez Blanco J
  • de la Rosa Trevín J
  • Conesa Mingo P
  • Marabini R
  • Carlos C
  • Carazo J
... Ver más Contraer

Journal Of Structural Biology (p. 20-27) - 1/10/2017

10.1016/j.jsb.2017.06.004 Ver en origen

  • ISSN 10478477

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

  • Jiménez de la Morena J
  • Conesa P
  • Fonseca YC
  • de Isidro-Gómez FP
  • Herreros D
  • Fernández-Giménez E
  • Strelak D
  • Moebel E
  • Buchholz TO
  • Jug F
  • Martinez-Sanchez A
  • Harastani M
  • Jonic S
  • Conesa JJ
  • Cuervo A
  • Losana P
  • Sánchez I
  • Iceta M
  • del Cano L
  • Gragera M
  • Melero R
  • Sharov G
  • Castaño-Díez D
  • Koster A
  • Piccirillo JG
  • Vilas JL
  • Otón J
  • Marabini R
  • Sorzano COS
  • Carazo JM
... Ver más Contraer

Journal Of Structural Biology - 1/9/2022

10.1016/j.jsb.2022.107872 Ver en origen

  • ISSN 10478477

Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

  • Sorzano C
  • De La Rosa Trevín J
  • Otón J
  • Vega J
  • Cuenca J
  • Zaldívar-Peraza A
  • Gómez-Blanco J
  • Vargas J
  • Quintana A
  • Marabini R
  • Carazo J
... Ver más Contraer

Methods In Molecular Biology (p. 171-193) - 1/1/2013

10.1007/978-1-62703-137-0_11 Ver en origen

  • ISSN 10643745

Structure and Uncoating of Immature Adenovirus

  • Perez-Berna, Ana J.
  • Marabini, Roberto
  • Scheres, Sjors H. W.
  • Menendez-Conejero, Rosa
  • Dmitriev, Igor P.
  • Curiel, David T.
  • Mangel, Walter F.
  • Flint, S. Jane
  • San Martin, Carmen;
... Ver más Contraer

Journal Of Molecular Biology (p. 547-557) - 18/9/2009

10.1016/j.jmb.2009.06.057 Ver en origen

  • ISSN 00222836

Structures of adenovirus incomplete particles clarify capsid architecture and show maturation changes of packaging protein L1 52/55k

  • Condezo G
  • Marabini R
  • Ayora S
  • Carazo J
  • Alba R
  • Chillón M
  • Martín C
... Ver más Contraer

Journal Of Virology (p. 9653-9664) - 1/1/2015

10.1128/jvi.01453-15 Ver en origen

  • ISSN 0022538X

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

  • Sorzano C
  • Jiménez A
  • Mota J
  • Vilas J
  • Maluenda D
  • Martínez M
  • Ramírez-Aportela E
  • Majtner T
  • Segura J
  • Sánchez-García R
  • Rancel Y
  • Del Caño L
  • Conesa P
  • Melero R
  • Jonic S
  • Vargas J
  • Cazals F
  • Freyberg Z
  • Krieger J
  • Bahar I
  • Marabini R
  • Carazo J
... Ver más Contraer

Acta Crystallographica Section F-Structural Biology Communications (p. 19-32) - 1/1/2019

10.1107/s2053230x18015108 Ver en origen

  • ISSN 2053230X

System models for PET statistical iterative reconstruction: A review

  • Iriarte, A.
  • Marabini, R.
  • Matej, S.
  • Sorzano, C. O. S.
  • Lewitt, R. M.;

Computerized Medical Imaging And Graphics (p. 30-48) - 1/3/2016

10.1016/j.compmedimag.2015.12.003 Ver en origen

  • ISSN 08956111

The Electron Microscopy eXchange (EMX) initiative

  • Marabini R
  • Ludtke SJ
  • Murray SC
  • Chiu W
  • de la Rosa-Trevín JM
  • Patwardhan A
  • Heymann JB
  • Carazo JM
... Ver más Contraer

Journal Of Structural Biology (p. 156-163) - 1/5/2016

10.1016/j.jsb.2016.02.008 Ver en origen

  • ISSN 10478477

The first single particle analysis Map Challenge: A summary of the assessments

  • Heymann JB
  • Marabini R
  • Kazemi M
  • Sorzano COS
  • Holmdahl M
  • Mendez JH
  • Stagg SM
  • Jonic S
  • Palovcak E
  • Armache JP
  • Zhao J
  • Cheng Y
  • Pintilie G
  • Chiu W
  • Patwardhan A
  • Carazo JM
... Ver más Contraer

Journal Of Structural Biology (p. 291-300) - 1/11/2018

10.1016/j.jsb.2018.08.010 Ver en origen

  • ISSN 10478477

The potential of grid computing in three-dimensional electron microscopy

  • Bilbao-Castro J
  • Marabini R
  • Carazo J
  • Garcia I
  • Fernandez J

Parallel Processing Letters (p. 151-162) - 1/6/2004

10.1142/s0129626404001805 Ver en origen

  • ISSN 01296264

Este/a investigador/a no tiene libros.

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Marabini Ruiz, Roberto

Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997

10.1007/bfb0032577 Ver en origen

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J
  • Herman G
  • Sorzano C
  • Marabini R

Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006

10.1007/978-0-387-69008-7_8 Ver en origen

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras I
  • Sorzano COS
  • Marabini R
  • Carazo JM
  • Ortiz-De-Solorzano C
  • Kybic J

Lecture Notes In Computer Science (p. 85-95) - 1/1/2006

10.1007/11889762_8 Ver en origen

  • ISBN 9783540462576
  • ISSN 03029743

Discrete Tomography in Electron Microscopy

  • Carazo, JM
  • Sorzano COS
  • Rietzel, E
  • Schroder, R
  • Marabini Ruiz, Roberto

Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999

10.1007/978-1-4612-1568-4_18 Ver en origen

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández JJ
  • Bilbao-Castro JR
  • Marabini R
  • Carazo JM
  • García I

Lecture Notes In Computer Science (p. 171-181) - 1/1/2004

10.1007/978-3-540-24689-3_22 Ver en origen

  • ISBN 9783540210481
  • ISSN 03029743

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano COS
  • Jiménez-Moreno A
  • Maluenda D
  • Ramírez-Aportela E
  • Martínez M
  • Cuervo A
  • Melero R
  • Conesa JJ
  • Sánchez-García R
  • Strelak D
  • Filipovic J
  • Fernández-Giménez E
  • de Isidro-Gómez F
  • Herreros D
  • Conesa P
  • del Caño L
  • Fonseca Y
  • de la Morena JJ
  • Macías JR
  • Losana P
  • Marabini R
  • Carazo JM
... Ver más Contraer

Methods In Molecular Biology (p. 257-289) - 1/1/2021

10.1007/978-1-0716-1406-8_13 Ver en origen

  • ISSN 10643745

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano COS
  • Marabini R
  • Vargas J
  • Otón J
  • Cuenca-Alba J
  • Quintana A
  • de la Rosa-Trevín JM
  • Carazo JM
... Ver más Contraer

Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014

10.1007/978-1-4614-9521-5_2 Ver en origen

  • ISSN 22965009

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM;

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994

  • iMarina

Soft X-ray tomography imaging for biological samples

  • Otón J
  • Sorzano COS
  • Chichón FJ
  • Carrascosa JL
  • Carazo JM
  • Marabini R

Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014

10.1007/978-1-4614-9521-5_8 Ver en origen

  • ISSN 22965009

3D reconstruction of 2D crystals from projections in real space

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J
  • Fernandez J
  • Matej S

Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002

10.1109/isbi.2002.1029351 Ver en origen

  • ISSN 19457928

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano C
  • Vargas J
  • Oton J
  • Abrishami V
  • De La Rosa-Trevin J
  • Del Riego S
  • Fernandez-Alderete A
  • Martinez-Rey C
  • Marabini R
  • Carazo J
... Ver más Contraer

2014 Ieee International Conference On Image Processing, Icip 2014 (p. 2095-2099) - 28/1/2014

10.1109/icip.2014.7025420 Ver en origen

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano C
  • Iriarte A
  • Marabini R
  • Carazo J

Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009

10.1109/wisp.2009.5286563 Ver en origen

  • ISBN 978-1-4244-5059-6

Effects of uneven sampling in 3D reconstructions

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N;
... Ver más Contraer

Electron Microscopy 1998, Vol 1: General Interest And Instrumentation (p. 771-772) - 1/1/1998

  • iMarina

FSC-Q: A method for quality analysis of cryoEM-derived models

  • Ramirez-Aportela, E
  • Maluenda, D
  • Fonseca, YC
  • Conesa, P
  • Marabini, R
  • Sorzano, COS
  • Carazo, JM
... Ver más Contraer

Acta Crystallographica A-Foundation And Advances (p. C56-C56) - 1/8/2021

  • ISSN 20532733
  • iMarina

Image processing for Cellular tomography using soft X-rays

  • Sorzano
  • C O S Oton
  • J Cuenca
  • J Zaldivar-Perez
  • A Caffarena
  • G Sanchez-Jimenez
  • J Messaoudi
  • C Marco
  • S Marabini
  • R Carazo
  • J M
... Ver más Contraer

2012 9th Ieee International Symposium On Biomedical Imaging (Isbi) (p. 1322-1322) - 1/4/2012

10.1109/isbi.2012.6235808

  • ISBN 9781457718571
  • ISSN 9781457718588
  • iMarina

Iterative reconstruction for pet scanners with continuous scintillators

  • Iriarte A
  • Caffarena G
  • Lopez-Fernandez M
  • Garcia-Carmona R
  • Otero A
  • Sorzano C
  • Marabini R
... Ver más Contraer

Conference Proceedings : ... Annual International Conference Of The Ieee Engineering In Medicine And Biology Society. Ieee Engineering In Medicine And Biology Society. Conference (p. 2259-2262) - 4/11/2015

10.1109/embc.2015.7318842 Ver en origen

  • ISBN 978-142449271-8
  • ISSN 1557170X

On a prototype for a new distributed data base of volume data obtained by 3D imaging

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J;
... Ver más Contraer

Proceedings Of Spie - The International Society For Optical Engineering (p. 466-472) - 9/9/1994

10.1117/12.185208 Ver en origen

  • ISSN 0277786X

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.;
... Ver más Contraer

Proceedings Iwbbio 2014: International Work-Conference On Bioinformatics And Biomedical Engineering (p. 950-959) - 1/1/2014

  • ISBN 9788415814849
  • iMarina

Study of the collars extracted from T3 and 029 viral particles

  • MARCO, S
  • VALPUESTA, JM
  • CARAZO, JM
  • MARABINI, R
  • FUJISAWA, H
  • CARRASCOSA, JL;

Electron Microscopy 1994, Vols 3a And 3b: Applications In Biological Sciences (p. 535-536) - 1/1/1994

  • iMarina

Este/a investigador/a no tiene documentos de trabajo.

Este/a investigador/a no tiene informes técnicos.

Computación de altas prestaciones en tomografía

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Ejecución: 01-01-2010 - 01-01-2013

  • iMarina

Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.

  • Ignacio Arganda Carreras (Investigador/a)
  • Ana Iriarte Ruiz (Investigador/a)
  • Simone Santini (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))

Ejecución: 10-01-2007 - 04-04-2010

  • iMarina

Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.

  • Iriarte Ruiz, Ana (Investigador/a)
  • SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
  • Javier Velazquez Muriel (Investigador/a)
  • Monica Chagoyen Quiles (Investigador/a)
  • Carazo Garcia, Jose Maria S (Investigador/a)
  • Carlos Oscar Sanchez Sorzano (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))
... Ver más Contraer

Ejecución: 01-01-2005 - 31-05-2008

  • iMarina

Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Ejecución: 01-01-2010 - 31-12-2012

  • iMarina

High resolution three-dimensional reconstruction for small animal pet cameras

  • SORZANO SANCHEZ, CARLOS OSCAR (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Iriarte Ruiz, Ana

19/7/2012

  • iMarina

New computational methods toward atomic resolution in single particle cryo-electron microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • José María Carazo García (Director)
  • Carlos Oscar Sanchez Sorzano (Director)
  • Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami

22/6/2016

  • iMarina

Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • Roberto Marabini Ruiz (Director)
  • José María Carazo García (Director) Doctorando: Miguel de la Rosa

25/10/2017

  • iMarina

Este/a investigador/a no tiene patentes o licencias de software.

Última actualización de los datos: 18/03/24 22:26