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Author profile at the institutional portal

Marabini Ruiz, Roberto roberto.marabini@uam.es

Ingeniería informática / Universidad Autónoma de Madrid

Publications

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

  • de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano CO, Carazo JM

Journal Of Structural Biology (p. 93-9-99) - 1/7/2016

10.1016/j.jsb.2016.04.010 View at source

  • ISSN 10478477

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy

  • Sorzano C
  • Vargas J
  • Otón J
  • De La Rosa-Trevín J
  • Vilas J
  • Kazemi M
  • Melero R
  • Del Caño L
  • Cuenca J
  • Conesa P
  • Gómez-Blanco J
  • Marabini R
  • Carazo J
... View more Collapse

Biomed Research International - 1/1/2017

10.1155/2017/6482567 View at source

  • ISSN 23146133

ScipionCloud: An integrative and interactive gateway for large scale cryo electron microscopy image processing on commercial and academic clouds

  • Cuenca-Alba J
  • del Cano L
  • Gómez Blanco J
  • de la Rosa Trevín J
  • Conesa Mingo P
  • Marabini R
  • Carlos C
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 20-27) - 1/10/2017

10.1016/j.jsb.2017.06.004 View at source

  • ISSN 10478477

A review of resolution measures and related aspects in 3D Electron Microscopy

  • Sorzano C
  • Vargas J
  • Otón J
  • Abrishami V
  • de la Rosa-Trevín J
  • Gómez-Blanco J
  • Vilas J
  • Marabini R
  • Carazo J
... View more Collapse

Progress In Biophysics & Molecular Biology (p. 1-30) - 1/3/2017

10.1016/j.pbiomolbio.2016.09.005 View at source

  • ISSN 00796107

XTEND: Extending the depth of field in cryo soft X-ray tomography

  • Otón J
  • Pereiro E
  • Conesa J
  • Chichón F
  • Luque D
  • Rodríguez J
  • Pérez-Berná A
  • Sorzano C
  • Klukowska J
  • Herman G
  • Vargas J
  • Marabini R
  • Carrascosa J
  • Carazo J
... View more Collapse

Scientific Reports - 4/4/2017

10.1038/srep45808 View at source

  • ISSN 20452322

The first single particle analysis Map Challenge: A summary of the assessments

  • Heymann JB
  • Marabini R
  • Kazemi M
  • Sorzano COS
  • Holmdahl M
  • Mendez JH
  • Stagg SM
  • Jonic S
  • Palovcak E
  • Armache JP
  • Zhao J
  • Cheng Y
  • Pintilie G
  • Chiu W
  • Patwardhan A
  • Carazo JM
... View more Collapse

Journal Of Structural Biology (p. 291-300) - 1/11/2018

10.1016/j.jsb.2018.08.010 View at source

  • ISSN 10478477

A new algorithm for high-resolution reconstruction of single particles by electron microscopy

  • Sorzano C., Vargas J., de la Rosa-Trevín J., Jiménez A., Maluenda D., Melero R., Martínez M., Ramírez-Aportela E., Conesa P., Vilas J., Marabini R., Carazo J.

Journal Of Structural Biology (p. 329-337) - 1/11/2018

10.1016/j.jsb.2018.08.002 View at source

  • ISSN 10478477

Map challenge: Analysis using a pair comparison method based on Fourier shell correlation

  • Marabini R
  • Kazemi M
  • Sorzano C
  • Carazo J

Journal Of Structural Biology (p. 527-542) - 1/12/2018

10.1016/j.jsb.2018.09.009 View at source

  • ISSN 10478477

Using Scipion for stream image processing at Cryo-EM facilities

  • Gómez-Blanco J
  • de la Rosa-Trevín J
  • Marabini R
  • del Cano L
  • Jiménez A
  • Martínez M
  • Melero R
  • Majtner T
  • Maluenda D
  • Mota J
  • Rancel Y
  • Ramírez-Aportela E
  • Vilas J
  • Carroni M
  • Fleischmann S
  • Lindahl E
  • Ashton A
  • Basham M
  • Clare D
  • Savage K
  • Siebert C
  • Sharov G
  • Sorzano C
  • Conesa P
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 457-463) - 1/12/2018

10.1016/j.jsb.2018.10.001 View at source

  • ISSN 10478477

MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

  • Vilas J
  • Gómez-Blanco J
  • Conesa P
  • Melero R
  • Miguel de la Rosa-Trevín J
  • Otón J
  • Cuenca J
  • Marabini R
  • Carazo J
  • Vargas J
  • Sorzano C
... View more Collapse

Structure (p. 337-344.e4) - 6/2/2018

10.1016/j.str.2017.12.018 View at source

  • ISSN 09692126

This researcher has no books.

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM;

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994

  • iMarina

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Marabini Ruiz, Roberto

Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997

10.1007/bfb0032577 View at source

Discrete Tomography in Electron Microscopy

  • Carazo, JM
  • Sorzano COS
  • Rietzel, E
  • Schroder, R
  • Marabini Ruiz, Roberto

Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999

10.1007/978-1-4612-1568-4_18 View at source

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández JJ
  • Bilbao-Castro JR
  • Marabini R
  • Carazo JM
  • García I

Lecture Notes In Computer Science (p. 171-181) - 1/1/2004

10.1007/978-3-540-24689-3_22 View at source

  • ISBN 9783540210481
  • ISSN 03029743

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras I
  • Sorzano COS
  • Marabini R
  • Carazo JM
  • Ortiz-De-Solorzano C
  • Kybic J

Lecture Notes In Computer Science (p. 85-95) - 1/1/2006

10.1007/11889762_8 View at source

  • ISBN 9783540462576
  • ISSN 03029743

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J
  • Herman G
  • Sorzano C
  • Marabini R

Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006

10.1007/978-0-387-69008-7_8 View at source

Soft X-ray tomography imaging for biological samples

  • Otón J
  • Sorzano COS
  • Chichón FJ
  • Carrascosa JL
  • Carazo JM
  • Marabini R

Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014

10.1007/978-1-4614-9521-5_8 View at source

  • ISSN 22965009

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano COS
  • Marabini R
  • Vargas J
  • Otón J
  • Cuenca-Alba J
  • Quintana A
  • de la Rosa-Trevín JM
  • Carazo JM
... View more Collapse

Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014

10.1007/978-1-4614-9521-5_2 View at source

  • ISSN 22965009

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano COS
  • Jiménez-Moreno A
  • Maluenda D
  • Ramírez-Aportela E
  • Martínez M
  • Cuervo A
  • Melero R
  • Conesa JJ
  • Sánchez-García R
  • Strelak D
  • Filipovic J
  • Fernández-Giménez E
  • de Isidro-Gómez F
  • Herreros D
  • Conesa P
  • del Caño L
  • Fonseca Y
  • de la Morena JJ
  • Macías JR
  • Losana P
  • Marabini R
  • Carazo JM
... View more Collapse

Methods In Molecular Biology (p. 257-289) - 1/1/2021

10.1007/978-1-0716-1406-8_13 View at source

  • ISSN 10643745

Study of the collars extracted from T3 and 029 viral particles

  • MARCO, S
  • VALPUESTA, JM
  • CARAZO, JM
  • MARABINI, R
  • FUJISAWA, H
  • CARRASCOSA, JL;

Electron Microscopy 1994, Vols 3a And 3b: Applications In Biological Sciences (p. 535-536) - 1/1/1994

  • iMarina

Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype

  • Marabini Ruiz, Roberto

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 519-520) - 1/1/1994

  • iMarina

On a prototype for a new distributed data base of volume data obtained by 3D imaging

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J;
... View more Collapse

Proceedings Of Spie - The International Society For Optical Engineering (p. 466-472) - 9/9/1994

10.1117/12.185208 View at source

  • ISSN 0277786X

Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: Application of a new three- dimensional reconstruction algorithm and objective comparison with weighted backprojection

  • Marabini R
  • Rietzel E
  • Schroeder R
  • Herman G
  • Carazo J

Journal Of Structural Biology (p. 363-371) - 1/1/1997

10.1006/jsbi.1997.3923 View at source

  • ISSN 10478477

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR;
... View more Collapse

Electron Microscopy 1998, Vol 4: Biological Sciences (p. 421-422) - 1/1/1998

  • iMarina

Effects of uneven sampling in 3D reconstructions

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N;
... View more Collapse

Electron Microscopy 1998, Vol 1: General Interest And Instrumentation (p. 771-772) - 1/1/1998

  • iMarina

The effect of overabundant projection directions on 3D reconstruction algorithms

  • Sorzano C
  • Marabini R
  • Boisset N
  • Rietzel E
  • Schröder R
  • Herman G
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 108-118) - 1/1/2001

10.1006/jsbi.2001.4338 View at source

  • ISSN 10478477

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J

Proceedings (International Symposium On Biomedical Imaging) (p. 641-644) - 1/1/2002

10.1109/isbi.2002.1029339 View at source

  • ISBN 0-7803-7584-X
  • ISSN 19457928

3D reconstruction of 2D crystals from projections in real space

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J
  • Fernandez J
  • Matej S

Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002

10.1109/isbi.2002.1029351 View at source

  • ISSN 19457928

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano C
  • Iriarte A
  • Marabini R
  • Carazo J

Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009

10.1109/wisp.2009.5286563 View at source

  • ISBN 978-1-4244-5059-6

This researcher has no working papers.

This researcher has no technical reports.

Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.

  • Iriarte Ruiz, Ana (Investigador/a)
  • SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
  • Javier Velazquez Muriel (Investigador/a)
  • Monica Chagoyen Quiles (Investigador/a)
  • Carazo Garcia, Jose Maria S (Investigador/a)
  • Carlos Oscar Sanchez Sorzano (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))
... View more Collapse

Period: 01-01-2005 - 31-05-2008

  • iMarina

Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.

  • Ignacio Arganda Carreras (Investigador/a)
  • Ana Iriarte Ruiz (Investigador/a)
  • Simone Santini (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 10-01-2007 - 04-04-2010

  • iMarina

Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 31-12-2012

  • iMarina

Computación de altas prestaciones en tomografía

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 01-01-2013

  • iMarina

High resolution three-dimensional reconstruction for small animal pet cameras

  • SORZANO SANCHEZ, CARLOS OSCAR (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Iriarte Ruiz, Ana

19/7/2012

  • iMarina

New computational methods toward atomic resolution in single particle cryo-electron microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • José María Carazo García (Director)
  • Carlos Oscar Sanchez Sorzano (Director)
  • Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami

22/6/2016

  • iMarina

Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • Roberto Marabini Ruiz (Director)
  • José María Carazo García (Director) Doctorando: Miguel de la Rosa

25/10/2017

  • iMarina

This researcher has no patents or software licenses.

Last data update: 3/18/24 10:26 PM