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Author profile at the institutional portal

Marabini Ruiz, Roberto roberto.marabini@uam.es

Ingeniería informática / Universidad Autónoma de Madrid

Publications

Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques

  • Vargas J
  • Abrishami V
  • Marabini R
  • de la Rosa-Trevín J
  • Zaldivar A
  • Carazo J
  • Sorzano C
... View more Collapse

Journal Of Structural Biology (p. 342-353) - 1/9/2013

10.1016/j.jsb.2013.07.015 View at source

  • ISSN 10478477

Efficient initial volume determination from electron microscopy images of single particles

  • Vargas J
  • Álvarez-Cabrera AL
  • Marabini R
  • Carazo JM
  • Sorzano COS

Bioinformatics (p. 2891-2898) - 15/10/2014

10.1093/bioinformatics/btu404 View at source

  • ISSN 13674803

The soft x-ray transform

  • Klukowska J
  • Herman G
  • Otón J
  • Marabini R
  • Carazo J

Inverse Problems - 1/12/2014

10.1088/0266-5611/30/12/125015 View at source

  • ISSN 02665611

3D cryo-electron reconstruction of BmrA, a bacterial multidrug ABC transporter in an inward-facing conformation and in a lipidic environment

  • Fribourg, Pierre Frederic
  • Chami, Mohamed
  • Sorzano, Carlos Oscar S.
  • Gubellini, Francesca
  • Marabini, Roberto
  • Marco, Sergio
  • Jault, Jean-Michel
  • Levy, Daniel;
... View more Collapse

Journal Of Molecular Biology (p. 2059-2069) - 15/5/2014

10.1016/j.jmb.2014.03.002 View at source

  • ISSN 00222836

Structures of adenovirus incomplete particles clarify capsid architecture and show maturation changes of packaging protein L1 52/55k

  • Condezo G
  • Marabini R
  • Ayora S
  • Carazo J
  • Alba R
  • Chillón M
  • Martín C
... View more Collapse

Journal Of Virology (p. 9653-9664) - 1/1/2015

10.1128/jvi.01453-15 View at source

  • ISSN 0022538X

A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function

  • Abrishami V
  • Bilbao-Castro J
  • Vargas J
  • Marabini R
  • Carazo J
  • Sorzano C

Ultramicroscopy (p. 79-87) - 1/1/2015

10.1016/j.ultramic.2015.05.018 View at source

  • ISSN 03043991

Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star

  • Otón J
  • Sorzano C
  • Marabini R
  • Pereiro E
  • Carazo J

Optics Express (p. 9567-9572) - 1/1/2015

10.1364/oe.23.009567 View at source

  • ISSN 10944087

Fast and accurate conversion of atomic models into electron density maps

  • Sorzano C
  • Vargas J
  • Otón J
  • Abrishami V
  • de la Rosa-Trevín J
  • Riego S
  • Fernández-Alderete A
  • Martínez-Rey C
  • Marabini R
  • Carazo J
... View more Collapse

Aims Biophysics (p. 8-20) - 1/1/2015

10.3934/biophy.2015.1.8 View at source

  • ISSN 23779098

MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography

  • Cheng A
  • Henderson R
  • Mastronarde D
  • Ludtke S
  • Schoenmakers R
  • Short J
  • Marabini R
  • Dallakyan S
  • Agard D
  • Winn M
... View more Collapse

Journal Of Structural Biology (p. 146-150) - 1/11/2015

10.1016/j.jsb.2015.04.002 View at source

  • ISSN 10478477

A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy

  • Sorzano C
  • Vargas J
  • de la Rosa-Trevín J
  • Otón J
  • Álvarez-Cabrera A
  • Abrishami V
  • Sesmero E
  • Marabini R
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 213-219) - 1/3/2015

10.1016/j.jsb.2015.01.009 View at source

  • ISSN 10478477

This researcher has no books.

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM;

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994

  • iMarina

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Marabini Ruiz, Roberto

Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997

10.1007/bfb0032577 View at source

Discrete Tomography in Electron Microscopy

  • Carazo, JM
  • Sorzano COS
  • Rietzel, E
  • Schroder, R
  • Marabini Ruiz, Roberto

Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999

10.1007/978-1-4612-1568-4_18 View at source

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández JJ
  • Bilbao-Castro JR
  • Marabini R
  • Carazo JM
  • García I

Lecture Notes In Computer Science (p. 171-181) - 1/1/2004

10.1007/978-3-540-24689-3_22 View at source

  • ISBN 9783540210481
  • ISSN 03029743

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras I
  • Sorzano COS
  • Marabini R
  • Carazo JM
  • Ortiz-De-Solorzano C
  • Kybic J

Lecture Notes In Computer Science (p. 85-95) - 1/1/2006

10.1007/11889762_8 View at source

  • ISBN 9783540462576
  • ISSN 03029743

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J
  • Herman G
  • Sorzano C
  • Marabini R

Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006

10.1007/978-0-387-69008-7_8 View at source

Soft X-ray tomography imaging for biological samples

  • Otón J
  • Sorzano COS
  • Chichón FJ
  • Carrascosa JL
  • Carazo JM
  • Marabini R

Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014

10.1007/978-1-4614-9521-5_8 View at source

  • ISSN 22965009

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano COS
  • Marabini R
  • Vargas J
  • Otón J
  • Cuenca-Alba J
  • Quintana A
  • de la Rosa-Trevín JM
  • Carazo JM
... View more Collapse

Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014

10.1007/978-1-4614-9521-5_2 View at source

  • ISSN 22965009

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano COS
  • Jiménez-Moreno A
  • Maluenda D
  • Ramírez-Aportela E
  • Martínez M
  • Cuervo A
  • Melero R
  • Conesa JJ
  • Sánchez-García R
  • Strelak D
  • Filipovic J
  • Fernández-Giménez E
  • de Isidro-Gómez F
  • Herreros D
  • Conesa P
  • del Caño L
  • Fonseca Y
  • de la Morena JJ
  • Macías JR
  • Losana P
  • Marabini R
  • Carazo JM
... View more Collapse

Methods In Molecular Biology (p. 257-289) - 1/1/2021

10.1007/978-1-0716-1406-8_13 View at source

  • ISSN 10643745

Study of the collars extracted from T3 and 029 viral particles

  • MARCO, S
  • VALPUESTA, JM
  • CARAZO, JM
  • MARABINI, R
  • FUJISAWA, H
  • CARRASCOSA, JL;

Electron Microscopy 1994, Vols 3a And 3b: Applications In Biological Sciences (p. 535-536) - 1/1/1994

  • iMarina

Towards a data-bank of three-dimensional macromolecular structures: A WWW-based prototype

  • Marabini Ruiz, Roberto

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 519-520) - 1/1/1994

  • iMarina

On a prototype for a new distributed data base of volume data obtained by 3D imaging

  • MARABINI, R
  • VAQUERIZO, C
  • FERNANDEZ, JJJ
  • CARAZO, JM
  • LADJADJ, M
  • ODESANYA, O
  • FRANK, J;
... View more Collapse

Proceedings Of Spie - The International Society For Optical Engineering (p. 466-472) - 9/9/1994

10.1117/12.185208 View at source

  • ISSN 0277786X

Three-dimensional reconstruction from reduced sets of very noisy images acquired following a single-axis tilt schema: Application of a new three- dimensional reconstruction algorithm and objective comparison with weighted backprojection

  • Marabini R
  • Rietzel E
  • Schroeder R
  • Herman G
  • Carazo J

Journal Of Structural Biology (p. 363-371) - 1/1/1997

10.1006/jsbi.1997.3923 View at source

  • ISSN 10478477

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR;
... View more Collapse

Electron Microscopy 1998, Vol 4: Biological Sciences (p. 421-422) - 1/1/1998

  • iMarina

Effects of uneven sampling in 3D reconstructions

  • Sorzano, COS
  • Marabini, R
  • Carazo, JM
  • Rietzel, E
  • Schroeder, R
  • Herman, GT
  • Boisset, N;
... View more Collapse

Electron Microscopy 1998, Vol 1: General Interest And Instrumentation (p. 771-772) - 1/1/1998

  • iMarina

The effect of overabundant projection directions on 3D reconstruction algorithms

  • Sorzano C
  • Marabini R
  • Boisset N
  • Rietzel E
  • Schröder R
  • Herman G
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 108-118) - 1/1/2001

10.1006/jsbi.2001.4338 View at source

  • ISSN 10478477

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J

Proceedings (International Symposium On Biomedical Imaging) (p. 641-644) - 1/1/2002

10.1109/isbi.2002.1029339 View at source

  • ISBN 0-7803-7584-X
  • ISSN 19457928

3D reconstruction of 2D crystals from projections in real space

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J
  • Fernandez J
  • Matej S

Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002

10.1109/isbi.2002.1029351 View at source

  • ISSN 19457928

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano C
  • Iriarte A
  • Marabini R
  • Carazo J

Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009

10.1109/wisp.2009.5286563 View at source

  • ISBN 978-1-4244-5059-6

This researcher has no working papers.

This researcher has no technical reports.

Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.

  • Iriarte Ruiz, Ana (Investigador/a)
  • SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
  • Javier Velazquez Muriel (Investigador/a)
  • Monica Chagoyen Quiles (Investigador/a)
  • Carazo Garcia, Jose Maria S (Investigador/a)
  • Carlos Oscar Sanchez Sorzano (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))
... View more Collapse

Period: 01-01-2005 - 31-05-2008

  • iMarina

Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.

  • Ignacio Arganda Carreras (Investigador/a)
  • Ana Iriarte Ruiz (Investigador/a)
  • Simone Santini (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 10-01-2007 - 04-04-2010

  • iMarina

Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 31-12-2012

  • iMarina

Computación de altas prestaciones en tomografía

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 01-01-2013

  • iMarina

High resolution three-dimensional reconstruction for small animal pet cameras

  • SORZANO SANCHEZ, CARLOS OSCAR (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Iriarte Ruiz, Ana

19/7/2012

  • iMarina

New computational methods toward atomic resolution in single particle cryo-electron microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • José María Carazo García (Director)
  • Carlos Oscar Sanchez Sorzano (Director)
  • Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami

22/6/2016

  • iMarina

Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • Roberto Marabini Ruiz (Director)
  • José María Carazo García (Director) Doctorando: Miguel de la Rosa

25/10/2017

  • iMarina

This researcher has no patents or software licenses.

Last data update: 3/18/24 10:26 PM