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Author profile at the institutional portal

Marabini Ruiz, Roberto roberto.marabini@uam.es

Ingeniería informática / Universidad Autónoma de Madrid

Publications

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

  • de la Rosa-Trevín JM, Quintana A, Del Cano L, Zaldívar A, Foche I, Gutiérrez J, Gómez-Blanco J, Burguet-Castell J, Cuenca-Alba J, Abrishami V, Vargas J, Otón J, Sharov G, Vilas JL, Navas J, Conesa P, Kazemi M, Marabini R, Sorzano CO, Carazo JM

Journal Of Structural Biology (p. 93-9-99) - 1/7/2016

10.1016/j.jsb.2016.04.010 View at source

  • ISSN 10478477

The Electron Microscopy eXchange (EMX) initiative

  • Marabini R
  • Ludtke SJ
  • Murray SC
  • Chiu W
  • de la Rosa-Trevín JM
  • Patwardhan A
  • Heymann JB
  • Carazo JM
... View more Collapse

Journal Of Structural Biology (p. 156-163) - 1/5/2016

10.1016/j.jsb.2016.02.008 View at source

  • ISSN 10478477

System models for PET statistical iterative reconstruction: A review

  • Iriarte, A.
  • Marabini, R.
  • Matej, S.
  • Sorzano, C. O. S.
  • Lewitt, R. M.;

Computerized Medical Imaging And Graphics (p. 30-48) - 1/3/2016

10.1016/j.compmedimag.2015.12.003 View at source

  • ISSN 08956111

Particle alignment reliability in single particle electron cryomicroscopy: a general approach

  • Vargas J, Otón J, Marabini R, Carazo JM, Sorzano CO

Scientific Reports - 22/2/2016

10.1038/srep21626 View at source

  • ISSN 20452322

Fast and automatic identification of particle tilt pairs based on Delaunay triangulation

  • Vilas JL, Navas J, Gómez-Blanco J, de la Rosa-Trevín JM, Melero R, Peschiera I, Ferlenghi I, Cuenca J, Marabini R, Carazo JM, Vargas J, Sorzano COS

Journal Of Structural Biology (p. 525-533) - 1/12/2016

10.1016/j.jsb.2016.10.007 View at source

  • ISSN 10478477

Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution

  • Oton, Joaquin
  • Pereiro, Eva
  • Perez-Berna, Ana J.
  • Millach, Laia
  • Sorzano, Carlos Oscar S.
  • Marabini, Roberto
  • Carazo, Jose M.;
... View more Collapse

Biomedical Optics Express (p. 5092-5103) - 1/12/2016

10.1364/boe.7.005092 View at source

  • ISSN 21567085

Local analysis of strains and rotations for macromolecular electron microscopy maps

  • Sorzano, C. O. S.
  • Martin-Ramos, A.
  • Prieto, F.
  • Melero, R.
  • Martin-Benito, J.
  • Jonic, S.
  • Navas-Calvente, J.
  • Vargas, J.
  • Oton, J.
  • Abrishami, V.
  • de la Rosa-Trevin, J. M.
  • Gomez-Blanco, J.
  • Vilas, J. L.
  • Marabini, R.
  • Carazo, J. M.;
... View more Collapse

JOURNAL OF STRUCTURAL BIOLOGY (p. 123-8) - 1/1/2016

10.1016/j.jsb.2016.04.001 View at source

  • ISSN 10478477

Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited

  • Sorzano C
  • Alcorlo M
  • De La Rosa-Trevín J
  • Melero R
  • Foche I
  • Zaldívar-Peraza A
  • Del Cano L
  • Vargas J
  • Abrishami V
  • Otón J
  • Marabini R
  • Carazo J
... View more Collapse

Scientific Reports (p. 14290-14290) - 22/9/2015

10.1038/srep14290 View at source

  • ISBN 20452322
  • ISSN 20452322

Three-dimensional reconstruction methods in Single Particle Analysis from transmission electron microscopy data

  • Carazo J
  • Sorzano C
  • Otón J
  • Marabini R
  • Vargas J

Archives Of Biochemistry And Biophysics (p. 39-48) - 17/8/2015

10.1016/j.abb.2015.05.003 View at source

  • ISSN 00039861

CTF Challenge: Result summary

  • Marabini R
  • Carragher B
  • Chen S
  • Chen J
  • Cheng A
  • Downing KH
  • Frank J
  • Grassucci RA
  • Bernard Heymann J
  • Jiang W
  • Jonic S
  • Liao HY
  • Ludtke SJ
  • Patwari S
  • Piotrowski AL
  • Quintana A
  • Sorzano COS
  • Stahlberg H
  • Vargas J
  • Voss NR
  • Chiu W
  • Carazo JM
... View more Collapse

Journal Of Structural Biology (p. 348-359) - 1/6/2015

10.1016/j.jsb.2015.04.003 View at source

  • ISSN 10478477

This researcher has no books.

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  • Sorzano COS
  • Jiménez-Moreno A
  • Maluenda D
  • Ramírez-Aportela E
  • Martínez M
  • Cuervo A
  • Melero R
  • Conesa JJ
  • Sánchez-García R
  • Strelak D
  • Filipovic J
  • Fernández-Giménez E
  • de Isidro-Gómez F
  • Herreros D
  • Conesa P
  • del Caño L
  • Fonseca Y
  • de la Morena JJ
  • Macías JR
  • Losana P
  • Marabini R
  • Carazo JM
... View more Collapse

Methods In Molecular Biology (p. 257-289) - 1/1/2021

10.1007/978-1-0716-1406-8_13 View at source

  • ISSN 10643745

Soft X-ray tomography imaging for biological samples

  • Otón J
  • Sorzano COS
  • Chichón FJ
  • Carrascosa JL
  • Carazo JM
  • Marabini R

Applied And Numerical Harmonic Analysis (p. 187-220) - 1/1/2014

10.1007/978-1-4614-9521-5_8 View at source

  • ISSN 22965009

Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards

  • Sorzano COS
  • Marabini R
  • Vargas J
  • Otón J
  • Cuenca-Alba J
  • Quintana A
  • de la Rosa-Trevín JM
  • Carazo JM
... View more Collapse

Applied And Numerical Harmonic Analysis (p. 7-42) - 1/1/2014

10.1007/978-1-4614-9521-5_2 View at source

  • ISSN 22965009

Consistent and elastic registration of histological sections using vector-spline regularization

  • Arganda-Carreras I
  • Sorzano COS
  • Marabini R
  • Carazo JM
  • Ortiz-De-Solorzano C
  • Kybic J

Lecture Notes In Computer Science (p. 85-95) - 1/1/2006

10.1007/11889762_8 View at source

  • ISBN 9783540462576
  • ISSN 03029743

Algorithms for three-dimensional reconstruction from the imperfect projection data provided by electron microscopy

  • Carazo J
  • Herman G
  • Sorzano C
  • Marabini R

Electron Tomography: Methods For Three-Dimensional Visualization Of Structures In The Cell (p. 217-243) - 1/1/2006

10.1007/978-0-387-69008-7_8 View at source

Grid computing in structure determination of biological specimens by electron microscope tomography

  • Fernández JJ
  • Bilbao-Castro JR
  • Marabini R
  • Carazo JM
  • García I

Lecture Notes In Computer Science (p. 171-181) - 1/1/2004

10.1007/978-3-540-24689-3_22 View at source

  • ISBN 9783540210481
  • ISSN 03029743

Discrete Tomography in Electron Microscopy

  • Carazo, JM
  • Sorzano COS
  • Rietzel, E
  • Schroder, R
  • Marabini Ruiz, Roberto

Discrete Tomography: Foundations, Algorithms, And Applications (p. 405-416) - 1/1/1999

10.1007/978-1-4612-1568-4_18 View at source

A GA-optimized neural network for classification of biological particles from electron-microscopy images

  • Marabini Ruiz, Roberto

Biological And Artificial Computation: From Neuroscience To Technology: International Work-Conference On Artificial And Natural Neural Networks, Iwann'97 (p. 1174-1182) - 1/1/1997

10.1007/bfb0032577 View at source

Pattern recognition and classification of images of biological macromolecules using neural networks

  • MARABINI, R
  • CARAZO, JM;

Electron Microscopy 1994, Vol 1: Interdisciplinary Developments And Tools (p. 501-502) - 1/1/1994

  • iMarina

FSC-Q: A method for quality analysis of cryoEM-derived models

  • Ramirez-Aportela, E
  • Maluenda, D
  • Fonseca, YC
  • Conesa, P
  • Marabini, R
  • Sorzano, COS
  • Carazo, JM
... View more Collapse

Acta Crystallographica A-Foundation And Advances (p. C56-C56) - 1/8/2021

  • ISSN 20532733
  • iMarina

Iterative reconstruction for pet scanners with continuous scintillators

  • Iriarte A
  • Caffarena G
  • Lopez-Fernandez M
  • Garcia-Carmona R
  • Otero A
  • Sorzano C
  • Marabini R
... View more Collapse

Conference Proceedings : ... Annual International Conference Of The Ieee Engineering In Medicine And Biology Society. Ieee Engineering In Medicine And Biology Society. Conference (p. 2259-2262) - 4/11/2015

10.1109/embc.2015.7318842 View at source

  • ISBN 978-142449271-8
  • ISSN 1557170X

An image processing approach to the simulation of electron microscopy volumes of atomic structures

  • Sorzano C
  • Vargas J
  • Oton J
  • Abrishami V
  • De La Rosa-Trevin J
  • Del Riego S
  • Fernandez-Alderete A
  • Martinez-Rey C
  • Marabini R
  • Carazo J
... View more Collapse

2014 Ieee International Conference On Image Processing, Icip 2014 (p. 2095-2099) - 28/1/2014

10.1109/icip.2014.7025420 View at source

Outlier detection for single particle analysis in Electron Microscopy

  • Sorzano, C. O. S.
  • Vargas, J.
  • de la Rosa-Trevin, J. M.
  • Zaldivar-Peraza, A.
  • Oton, J.
  • Abrishami, V.
  • Foche, I.
  • Marabini, R.
  • Caffarena, G.
  • Carazo, J. M.;
... View more Collapse

Proceedings Iwbbio 2014: International Work-Conference On Bioinformatics And Biomedical Engineering (p. 950-959) - 1/1/2014

  • ISBN 9788415814849
  • iMarina

Image processing for Cellular tomography using soft X-rays

  • Sorzano
  • C O S Oton
  • J Cuenca
  • J Zaldivar-Perez
  • A Caffarena
  • G Sanchez-Jimenez
  • J Messaoudi
  • C Marco
  • S Marabini
  • R Carazo
  • J M
... View more Collapse

2012 9th Ieee International Symposium On Biomedical Imaging (Isbi) (p. 1322-1322) - 1/4/2012

10.1109/isbi.2012.6235808

  • ISBN 9781457718571
  • ISSN 9781457718588
  • iMarina

Effects of the Downsampling Scheme on Three-dimensional Electron Microscopy of Single Particles

  • Sorzano C
  • Iriarte A
  • Marabini R
  • Carazo J

Wisp 2009: 6th Ieee International Symposium On Intelligent Signal Processing, Proceedings (p. 175-179) - 10/12/2009

10.1109/wisp.2009.5286563 View at source

  • ISBN 978-1-4244-5059-6

Volumetric constraints in 3D tomography applied to electron microscopy

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J

Proceedings (International Symposium On Biomedical Imaging) (p. 641-644) - 1/1/2002

10.1109/isbi.2002.1029339 View at source

  • ISBN 0-7803-7584-X
  • ISSN 19457928

3D reconstruction of 2D crystals from projections in real space

  • Marabini R
  • Herman G
  • Sorzano C
  • Carazo J
  • Fernandez J
  • Matej S

Proceedings (International Symposium On Biomedical Imaging) (p. 689-692) - 1/1/2002

10.1109/isbi.2002.1029351 View at source

  • ISSN 19457928

The effect of overabundant projection directions on 3D reconstruction algorithms

  • Sorzano C
  • Marabini R
  • Boisset N
  • Rietzel E
  • Schröder R
  • Herman G
  • Carazo J
... View more Collapse

Journal Of Structural Biology (p. 108-118) - 1/1/2001

10.1006/jsbi.2001.4338 View at source

  • ISSN 10478477

Zero-loss P-contrast in EFTEM

  • Rietzel, E
  • Schorsch, P
  • Muller, H
  • Marabini, R
  • Sorzano, C
  • Carazo, JM
  • Schimpf, U
  • Leue, C
  • Holmes, KC
  • Schroder, RR;
... View more Collapse

Electron Microscopy 1998, Vol 4: Biological Sciences (p. 421-422) - 1/1/1998

  • iMarina

This researcher has no working papers.

This researcher has no technical reports.

Reconstrucción tridimensional de vírus icosahedricos preservando sus características no icosahedricas.

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 31-12-2012

  • iMarina

Computación de altas prestaciones en tomografía

  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 01-01-2010 - 01-01-2013

  • iMarina

Hacia la proteomica visual: Herramientas para el cálculo y manejo de estructuras tridimensionales.

  • Ignacio Arganda Carreras (Investigador/a)
  • Ana Iriarte Ruiz (Investigador/a)
  • Simone Santini (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))

Period: 10-01-2007 - 04-04-2010

  • iMarina

Reconstrucción tridimensional de alta resolución en camaras pet de animales pequeños.

  • Iriarte Ruiz, Ana (Investigador/a)
  • SORZANO SANCHEZ, CARLOS OSCAR (Investigador/a)
  • Javier Velazquez Muriel (Investigador/a)
  • Monica Chagoyen Quiles (Investigador/a)
  • Carazo Garcia, Jose Maria S (Investigador/a)
  • Carlos Oscar Sanchez Sorzano (Investigador/a)
  • Marabini Ruiz, Roberto (Investigador principal (IP))
... View more Collapse

Period: 01-01-2005 - 31-05-2008

  • iMarina

Scipion: a software framework toward integration, reproducibility and validation in 3D Electron Microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • Roberto Marabini Ruiz (Director)
  • José María Carazo García (Director) Doctorando: Miguel de la Rosa

25/10/2017

  • iMarina

New computational methods toward atomic resolution in single particle cryo-electron microscopy

  • Marabini Ruiz, Roberto (Autor o Coautor)
  • José María Carazo García (Director)
  • Carlos Oscar Sanchez Sorzano (Director)
  • Roberto Marabini Ruiz (Director) Doctorando: Vahid Abrishami

22/6/2016

  • iMarina

High resolution three-dimensional reconstruction for small animal pet cameras

  • SORZANO SANCHEZ, CARLOS OSCAR (Director)
  • Marabini Ruiz, Roberto (Director) Doctorando: Iriarte Ruiz, Ana

19/7/2012

  • iMarina

This researcher has no patents or software licenses.

Last data update: 3/18/24 10:26 PM